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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
583
ChIP-seq
181
ATAC-seq
179
single cell RNA-seq
160
DNase-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
583
DNA binding
371
DNA accessibility
195
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
179
August, 2021
145
August, 2017
145
June, 2019
101
February, 2021
91
October, 2019
February, 2023
82
May, 2019
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
46
July, 2019
40
May, 2022
29
March, 2020
26
November, 2018
25
May, 2024
23
May, 2020
21
November, 2019
21
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
745
bam
637
bed narrowPeak
591
bigWig
435
bigBed narrowPeak
252
fastq
181
bed bed3+
180
bed broadPeak
158
bigBed broadPeak
151
tsv
128
tagAlign
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
1315
Homo sapiens
Biosample type
1322
tissue
714
primary cell
524
cell line
191
in vitro differentiated cells
9
stem cell
Organ
239
kidney
224
heart
177
pancreas
147
liver
133
brain
100
limb
92
bone element
78
adipose tissue
78
connective tissue
73
blood vessel
73
vasculature
68
musculature of body
30
artery
30
nerve
23
spleen
20
lung
ureter
8
eye
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1247
AMP
47
KPMP
19
LungMap
9
T1D
Genome assembly (visualization)
659
GRCh38
569
hg19
Lab
1080
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
27
Kyle Gaulton, UCSD
25
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
month_released!
February, 2023
organ_slims!
ureter
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
1322 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
17
75
64
13
6
1
1
1
liver
103
20
1
2
3
1
1
1
1
islet of Langerhans
34
57
6
1
5
4
3
1
1
4
bone element
84
heart left ventricle
26
2
18
3
4
1
1
1
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