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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
834
ChIP-seq
202
ATAC-seq
174
single cell RNA-seq
173
DNase-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
14
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
834
DNA binding
407
DNA accessibility
190
Transcription
36
DNA methylation
14
3D chromatin structure
Target of assay
574
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
195
August, 2017
194
October, 2019
173
August, 2021
160
June, 2019
101
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
65
May, 2019
50
May, 2020
48
December, 2017
47
February, 2023
47
September, 2023
42
July, 2019
40
May, 2022
40
May, 2024
29
March, 2020
26
November, 2018
23
October, 2017
November, 2019
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
903
bam
864
bed narrowPeak
811
bigWig
499
bigBed narrowPeak
280
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
144
tsv
98
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1590
Homo sapiens
Biosample type
1599
tissue
806
primary cell
520
cell line
253
in vitro differentiated cells
10
stem cell
Organ
298
heart
249
kidney
248
brain
202
pancreas
191
liver
126
blood vessel
vasculature
115
limb
96
bone element
91
connective tissue
90
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
25
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1509
AMP
47
KPMP
24
T1D
19
LungMap
Genome assembly (visualization)
842
GRCh38
772
hg19
Lab
1329
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
month_released!
November, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
1599 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
27
75
64
13
6
1
1
1
liver
145
20
1
2
3
1
1
1
1
islet of Langerhans
71
49
6
1
7
4
2
1
1
4
bone element
84
heart left ventricle
35
2
18
3
4
1
1
1
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