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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
583
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
583
DNA binding
470
DNA accessibility
196
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
627
histone modification
626
histone
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
179
August, 2021
163
June, 2019
145
August, 2017
101
February, 2021
91
October, 2019
82
February, 2023
82
May, 2019
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
46
July, 2019
40
May, 2022
29
March, 2020
26
November, 2018
25
May, 2024
23
May, 2020
21
November, 2019
21
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
763
bam
718
bed narrowPeak
609
bigWig
453
bigBed narrowPeak
252
fastq
199
bed bed3+
198
bed broadPeak
176
bigBed broadPeak
151
tsv
128
tagAlign
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1415
Homo sapiens
Biosample type
1422
tissue
726
primary cell
530
cell line
203
in vitro differentiated cells
9
stem cell
Organ
260
heart
239
kidney
190
pancreas
147
liver
134
brain
108
blood vessel
108
vasculature
100
limb
96
bone element
79
adipose tissue
79
connective tissue
68
musculature of body
65
artery
35
eye
30
nerve
23
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1334
AMP
47
KPMP
22
T1D
19
LungMap
Genome assembly (visualization)
712
GRCh38
620
hg19
Lab
1167
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
25
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
organ_slims!
lymph node
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
1422 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
17
75
64
13
6
1
1
1
liver
103
20
1
2
3
1
1
1
1
islet of Langerhans
34
68
6
1
7
4
3
1
1
4
bone element
84
heart left ventricle
26
2
18
3
4
1
1
1
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