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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • total RNA-seq
  • 907ChIP-seq
  • 260ATAC-seq
  • 180single cell RNA-seq
  • 178DNase-seq
  • 87RNA microarray
  • 28snATAC-seq
  • 27WGBS
  • 25pCHi-C
  • 16Hi-C
  • 16small RNA-seq
  • 11RRBS
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
Assay category
  • 907DNA binding
  • 470DNA accessibility
  • 196Transcription
  • 38DNA methylation
  • 163D chromatin structure
Target of assay
  • 628histone modification
  • 627histone
  • 324narrow histone mark
  • 303broad histone mark
  • 187control
  • 94transcription factor
  • 28RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
  • 2nucleotide modification
Date released
  • 220October, 2019
  • 195August, 2017
  • 179August, 2021
  • 163June, 2019
  • 115May, 2019
  • 101February, 2021
  • 82February, 2023
  • 82November, 2017
  • 80April, 2019
  • 74October, 2018
  • 50May, 2020
  • 48December, 2017
  • 47September, 2023
  • 46July, 2019
  • 40May, 2022
  • 40May, 2024
  • 31March, 2020
  • 26November, 2018
  • 23October, 2017
  • 21November, 2019
  • 19April, 2020
  • 14May, 2023
  • 8January, 2021
  • 7December, 2018
  • 7January, 2019
  • 6April, 2018
  • 6September, 2017
  • 5March, 2019
  • 4November, 2020
  • 3December, 2019
  • 2January, 2018
  • 1August, 2022
  • 1May, 2021
Available data
  • 1006bam
  • 984bed narrowPeak
  • 877bigWig
  • 561bigBed narrowPeak
  • 280fastq
  • 238tagAlign
  • 213bed broadPeak
  • 205bed bed3+
  • 176bigBed broadPeak
  • 151tsv
  • 98txt
  • 64xls
  • 25bed bedMethyl
  • 25bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1737Homo sapiens
Biosample type
  • 1746tissue
  • 841primary cell
  • 549cell line
  • 258in vitro differentiated cells
  • 10stem cell
Organ
  • 298heart
  • 249kidney
  • 248brain
  • 222pancreas
  • 191liver
  • 126blood vessel
  • 126vasculature
  • 115limb
  • 96bone element
  • 92connective tissue
  • 91adipose tissue
  • 77musculature of body
  • 71artery
  • 38nerve
  • 37eye
  • 25spleen
  • 20lung
  • 18ureter
  • 13epithelium
  • 12skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 1656AMP
  • 47KPMP
  • 24T1D
  • 19LungMap
Genome assembly (visualization)
  • 963GRCh38
  • 859hg19
Lab
  • 1476AMP-T2D consortium
  • 93Katalin Susztak, Upenn
  • 47KPMP
  • 40Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 3Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 90inconsistent ontology term
  • 27inconsistent control
  • 9audit script error
Audit category:
  • 26missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 1inconsistent assembly
assay_title!
  • total RNA-seq
BIOSAMPLE
ASSAY

1746 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney277564136111
liver145201231111
islet of Langerhans716861743114
bone element84
heart left ventricle3521834111
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