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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
21
ATAC-seq
17
pCHi-C
10
snATAC-seq
9
single cell RNA-seq
total RNA-seq
1
DNAme array
Assay category
74
DNA binding
31
DNA accessibility
9
Transcription
1
DNA methylation
Target of assay
54
histone
54
histone modification
32
broad histone mark
22
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
211
August, 2021
156
May, 2022
143
February, 2021
129
August, 2017
113
May, 2021
112
February, 2023
56
May, 2020
50
October, 2019
47
September, 2023
46
March, 2020
43
September, 2020
40
May, 2024
26
July, 2019
19
April, 2020
16
January, 2021
14
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
0
January, 2019
Available data
154
bed narrowPeak
149
bigWig
bam
90
tagAlign
25
fastq
21
bigBed narrowPeak
Organism
131
Homo sapiens
Biosample type
54
primary cell
42
in vitro differentiated cells
20
tissue
16
cell line
Organ
19
lung
16
epithelium
16
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
96
AMP
19
LungMap
17
T1D
Genome assembly (visualization)
38
hg19
Lab
92
Kyle Gaulton, UCSD
21
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
17
inconsistent ontology term
assay_title!
total RNA-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
132 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
snATAC-seq
single cell RNA-seq
DNAme array
primary cell
CD8-positive, alpha-beta T cell
33
1
monocyte
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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in vitro differentiated cells
embryonic stem cell
37
5
tissue
lung
10
9
thymus
1
cell line
EndoC_BH1
16
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