Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
total RNA-seq
47
WGBS
6
Hi-C
6
RRBS
3
MeRIP-seq
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
81
DNA accessibility
53
DNA methylation
6
3D chromatin structure
Target of assay
3
control
nucleotide modification
Date released
80
May, 2022
16
May, 2021
13
February, 2023
8
July, 2019
7
August, 2020
6
February, 2021
3
November, 2020
3
October, 2022
3
September, 2020
2
August, 2021
2
March, 2020
2
October, 2019
1
December, 2019
1
November, 2019
Available data
bam
210
bigWig
176
fastq
138
bed narrowPeak
80
zippedFastqFolder
78
tsv
63
bigBed narrowPeak
19
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
4
bedpe bed3+
4
hic
3
cool
2
hdf5
Organism
146
Homo sapiens
Biosample type
109
primary cell
25
cell line
13
tissue
Organ
185
pancreas
179
heart
161
kidney
149
epithelium
89
bone element
84
connective tissue
80
liver
48
vasculature
47
blood vessel
46
adipose tissue
37
artery
37
musculature of body
35
eye
31
brain
20
lung
9
blood
9
bodily fluid
5
gonad
5
limb
5
ovary
4
skeleton
2
intestine
2
thymus
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
99
HPAP
48
AMP
Genome assembly (visualization)
26
hg19
10
GRCh38
Lab
99
Klaus Kaestner, Upenn
45
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
25
inconsistent ontology term
4
audit script error
assay_title!
total RNA-seq
files.file_type!
bam
organ_slims!
vein
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
147 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
WGBS
Hi-C
RRBS
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
29
31
1
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
+ See 8 more…
cell line
EndoC_BH1
18
1
3
2
1
tissue
pigmented layer of retina
12
renal glomerulus
1
See all biosamples
Download