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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
total RNA-seq
19
WGBS
18
small RNA-seq
15
RRBS
6
ATAC-seq
4
Hi-C
4
single cell RNA-seq
3
FAIRE-seq
Assay category
70
DNA binding
34
DNA methylation
22
Transcription
9
DNA accessibility
4
3D chromatin structure
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
289
August, 2017
276
October, 2019
240
August, 2021
217
May, 2021
173
May, 2022
164
February, 2021
151
May, 2020
120
May, 2019
105
February, 2023
80
April, 2019
79
December, 2017
79
November, 2018
74
October, 2018
60
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
31
June, 2019
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
November, 2020
9
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
125
bam
121
bigWig
88
fastq
80
bed narrowPeak
75
bigBed narrowPeak
30
bed bedMethyl
30
bigBed bedMethyl
21
tsv
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
4
hdf5
1
csv
Organism
139
Homo sapiens
Biosample type
63
tissue
61
cell line
15
primary cell
Organ
55
liver
15
blood
15
bodily fluid
15
heart
11
brain
9
pancreas
8
musculature of body
8
spleen
6
epithelium
6
kidney
5
limb
5
vasculature
4
blood vessel
4
connective tissue
3
adipose tissue
1
artery
1
eye
1
pericardium
Project
139
AMP
Genome assembly (visualization)
105
GRCh38
105
hg19
Lab
139
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
total RNA-seq
files.file_type!
bed bed3+
bed bedgraph
BIOSAMPLE
ASSAY
139 results
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Clear Filters
ChIP-seq
WGBS
small RNA-seq
RRBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
spleen
6
2
heart left ventricle
4
1
2
liver
4
1
body of pancreas
2
2
gastrocnemius medialis
4
+ See 25 more…
cell line
HepG2
45
1
GM12878
15
primary cell
cerebellar granule cell
2
Purkinje cell
1
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 9 more…
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