Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
546
ChIP-seq
total RNA-seq
23
ATAC-seq
4
WGBS
3
Hi-C
3
small RNA-seq
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
546
DNA binding
24
DNA accessibility
4
DNA methylation
4
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
51
May, 2020
50
August, 2017
49
November, 2018
23
August, 2021
20
May, 2022
6
October, 2019
4
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
Available data
522
bam
463
bigWig
460
fastq
441
bed narrowPeak
358
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
5
tsv
3
bed bedMethyl
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
586
Homo sapiens
Biosample type
385
cell line
184
tissue
15
in vitro differentiated cells
2
primary cell
Organ
586
liver
514
pancreas
366
epithelium
283
heart
232
brain
212
kidney
180
connective tissue
160
vasculature
157
blood vessel
97
bone element
85
adipose tissue
81
artery
78
limb
69
blood
69
bodily fluid
52
musculature of body
37
eye
36
nerve
22
spleen
20
embryo
20
lung
20
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
586
AMP
Genome assembly (visualization)
451
hg19
360
GRCh38
Lab
544
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
total RNA-seq
files.file_type!
bed bed3+
bigBed bedMethyl
organ_slims!
large intestine
BIOSAMPLE
ASSAY
586 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
STARR-seq
pCHi-C
DNase-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
1
2
2
1
1
tissue
liver
142
20
3
1
1
1
1
right lobe of liver
10
1
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
Liver fetal (hepatocyte)
1
hepatocyte
1
Download