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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
7
WGBS
5
GRO-seq
3
ATAC-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
70
DNA binding
7
DNA methylation
4
DNA accessibility
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
406
November, 2017
289
August, 2017
276
October, 2019
217
May, 2021
173
May, 2022
168
February, 2021
161
August, 2021
151
May, 2020
120
May, 2019
108
February, 2023
80
April, 2019
79
December, 2017
79
November, 2018
74
October, 2018
60
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
31
June, 2019
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
11
November, 2020
9
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
93
fastq
88
bigWig
87
bam
73
bed narrowPeak
73
bigBed narrowPeak
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
87
Homo sapiens
Biosample type
62
cell line
19
tissue
4
in vitro differentiated cells
1
primary cell
1
stem cell
Organ
50
liver
16
blood
16
bodily fluid
8
spleen
5
pancreas
1
adipose tissue
1
connective tissue
1
embryo
1
musculature of body
Project
87
AMP
Genome assembly (visualization)
70
GRCh38
65
hg19
5
hg18
Lab
87
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
total RNA-seq
files.file_type!
bed bed3+
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
87 results
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Clear Filters
ChIP-seq
WGBS
GRO-seq
ATAC-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
1
tissue
spleen
6
2
liver
4
pancreas
2
1
body of pancreas
2
adipose tissue
1
+ See 1 more…
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
primary cell
pancreatic cell
1
stem cell
hESC
1
See all biosamples
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