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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
41
WGBS
34
ChIP-seq
34
single cell RNA-seq
total RNA-seq
21
snATAC-seq
1
Hi-C
Assay category
98
DNA accessibility
41
DNA methylation
34
DNA binding
34
Transcription
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
406
November, 2017
289
August, 2017
276
October, 2019
240
August, 2021
217
May, 2021
173
May, 2022
168
February, 2021
151
May, 2020
120
May, 2019
108
February, 2023
80
April, 2019
79
December, 2017
79
November, 2018
74
October, 2018
60
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
31
June, 2019
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
November, 2020
9
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
68
bed narrowPeak
53
fastq
52
bam
50
bigWig
30
bigBed narrowPeak
bed bed3+
1
txt
Organism
208
Homo sapiens
Biosample type
134
primary cell
46
tissue
28
cell line
Organ
98
pancreas
80
epithelium
27
blood
27
bodily fluid
21
liver
7
spleen
1
musculature of body
Project
134
HPAP
74
AMP
Genome assembly (visualization)
68
hg19
30
GRCh38
Lab
134
Klaus Kaestner, Upenn
36
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
total RNA-seq
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
208 results
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Clear Filters
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
islet of Langerhans
18
spleen
7
skeletal muscle tissue
1
cell line
GM12878
27
HepG2
1
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