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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
161
ChIP-seq
22
ATAC-seq
17
pCHi-C
1
DNAme array
1
Hi-C
Assay category
161
DNA binding
22
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
138
histone
138
histone modification
76
broad histone mark
62
narrow histone mark
15
transcription factor
8
control
5
RNA binding protein
Date released
400
November, 2017
260
August, 2017
246
October, 2019
237
August, 2021
197
May, 2021
162
February, 2021
151
May, 2020
115
May, 2019
95
February, 2023
93
May, 2022
80
April, 2019
79
November, 2018
74
October, 2018
60
December, 2017
54
July, 2019
47
September, 2023
45
March, 2020
40
May, 2024
40
September, 2020
35
December, 2018
26
November, 2019
25
January, 2019
25
June, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
July, 2018
14
May, 2023
12
September, 2018
8
January, 2018
5
March, 2019
5
March, 2023
5
November, 2020
4
December, 2019
4
September, 2017
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
130
bed narrowPeak
125
bigWig
101
bam
87
tagAlign
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
202
Homo sapiens
Biosample type
151
primary cell
45
in vitro differentiated cells
6
tissue
Organ
25
pancreas
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
101
AMP
101
T1D
Genome assembly (visualization)
141
hg19
102
GRCh38
Lab
176
Kyle Gaulton, UCSD
21
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
4
inconsistent ontology term
assay_title!
total RNA-seq
files.file_type!
bed bed3+
organ_slims!
epithelium
BIOSAMPLE
ASSAY
202 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
DNAme array
Hi-C
primary cell
monocyte
85
13
1
1
CD8-positive, alpha-beta T cell
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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in vitro differentiated cells
embryonic stem cell
37
5
cardiomyocytes
3
tissue
islet of Langerhans
4
1
thymus
1
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