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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
3
DNase-seq
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
29
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
80
May, 2022
35
September, 2018
33
April, 2018
33
July, 2018
30
October, 2019
29
August, 2017
20
May, 2021
19
December, 2017
15
November, 2019
13
February, 2023
7
August, 2020
6
February, 2021
6
July, 2019
6
June, 2019
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
4
March, 2020
3
August, 2018
3
August, 2021
3
October, 2022
3
September, 2020
1
December, 2019
1
June, 2018
Available data
34
bam
26
bigWig
25
bed narrowPeak
18
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
bed bed3+
1
hic
1
tar
Organism
35
Homo sapiens
Biosample type
34
primary cell
1
cell line
Organ
113
brain
93
blood vessel
93
vasculature
68
limb
36
nerve
35
epithelium
29
artery
29
kidney
27
heart
19
vein
18
pancreas
7
eye
7
musculature of body
6
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
35
AMP
Genome assembly (visualization)
26
hg19
22
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
1
1
epithelial cell of proximal tubule
7
kidney epithelial cell
5
Liver fetal (hepatocyte)
1
kidney glomerular epithelial cell
1
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cell line
glomerular visceral epithelial cell
1
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