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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
10
MeRIP-seq
total RNA-seq
1
ATAC-seq
Assay category
74
DNA binding
1
DNA accessibility
Target of assay
34
control
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
5
nucleotide modification
Date released
406
November, 2017
289
August, 2017
270
October, 2019
217
May, 2021
173
May, 2022
154
February, 2021
151
May, 2020
148
August, 2021
99
May, 2019
79
December, 2017
79
November, 2018
74
October, 2018
72
February, 2023
49
April, 2018
48
July, 2018
47
September, 2018
47
September, 2023
45
July, 2019
44
March, 2020
43
September, 2020
41
November, 2019
35
December, 2018
26
June, 2019
25
January, 2019
24
February, 2018
23
April, 2019
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
November, 2020
9
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
76
bam
58
fastq
47
bed narrowPeak
46
bigBed narrowPeak
46
bigWig
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
85
Homo sapiens
Biosample type
78
tissue
6
cell line
1
primary cell
Organ
61
pancreas
24
connective tissue
23
adipose tissue
6
epithelium
Project
85
AMP
Genome assembly (visualization)
46
GRCh38
46
hg19
Lab
75
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_title!
total RNA-seq
files.file_type!
bed bed3+
organ_slims!
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BIOSAMPLE
ASSAY
85 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
tissue
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
islet of Langerhans
4
+ See 1 more…
cell line
EndoC_BH1
6
primary cell
osteoblast
1
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