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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
28
ATAC-seq
27
ChIP-seq
4
pCHi-C
1
GRO-seq
Assay category
28
DNA accessibility
27
DNA binding
Target of assay
15
histone
15
histone modification
11
narrow histone mark
8
control
4
broad histone mark
4
transcription factor
1
RNA binding protein
Date released
27
February, 2023
13
December, 2017
9
February, 2018
7
October, 2019
3
June, 2019
1
January, 2018
Available data
47
bed narrowPeak
29
bam
23
fastq
21
bigWig
7
bed bed3+
6
bigBed narrowPeak
bed broadPeak
4
bigBed broadPeak
bed bedMethyl
1
bigBed bedMethyl
Organism
60
Homo sapiens
Biosample type
34
tissue
23
in vitro differentiated cells
3
primary cell
Organ
536
liver
522
pancreas
365
epithelium
283
heart
220
brain
212
kidney
197
connective tissue
156
vasculature
155
blood vessel
97
bone element
88
adipose tissue
81
artery
78
limb
69
blood
69
bodily fluid
40
musculature of body
37
eye
36
nerve
23
embryo
22
spleen
20
lung
18
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
44
hg19
17
GRCh38
1
hg18
Lab
60
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
total RNA-seq
files.file_type!
bed bedMethyl
bed broadPeak
BIOSAMPLE
ASSAY
60 results
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Clear Filters
ATAC-seq
ChIP-seq
pCHi-C
GRO-seq
tissue
retina
15
pigmented layer of retina
12
islet of Langerhans
1
2
4
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
primary cell
retinal pigment epithelial cell
3
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