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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
9
DNase-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
64
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
control
3
other context
3
other post-translational modification
Date released
335
November, 2017
266
August, 2017
245
October, 2019
233
August, 2021
210
June, 2019
208
May, 2021
174
May, 2022
167
February, 2021
128
May, 2020
112
February, 2023
97
May, 2019
75
November, 2018
73
December, 2017
66
April, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
45
October, 2018
43
September, 2020
40
May, 2024
39
November, 2019
38
July, 2019
31
December, 2018
21
January, 2019
20
October, 2017
19
April, 2020
16
February, 2018
16
January, 2021
14
May, 2023
8
January, 2018
7
August, 2020
7
November, 2020
5
December, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
82
fastq
81
bam
80
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
75
Homo sapiens
Biosample type
57
cell line
17
tissue
1
primary cell
Organ
52
liver
12
blood
12
bodily fluid
4
spleen
3
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
75
AMP
Genome assembly (visualization)
72
GRCh38
71
hg19
Lab
75
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
total RNA-seq
files.file_type!
bed bedMethyl
target.investigated_as!
control
BIOSAMPLE
ASSAY
75 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
GM12878
12
tissue
liver
4
2
spleen
3
1
body of pancreas
2
brain
2
omental fat pad
1
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primary cell
pancreatic cell
1
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