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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
10
DNase-seq
7
WGBS
5
MeRIP-seq
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
64
DNA binding
12
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
control
7
chromatin remodeller
5
nucleotide modification
3
other context
3
other post-translational modification
Date released
335
November, 2017
272
August, 2017
245
October, 2019
233
August, 2021
210
June, 2019
208
May, 2021
174
May, 2022
163
February, 2021
128
May, 2020
109
February, 2023
97
May, 2019
82
November, 2018
73
December, 2017
66
April, 2019
61
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
45
October, 2018
43
September, 2020
40
May, 2024
39
November, 2019
31
December, 2018
21
January, 2019
20
October, 2017
19
April, 2020
16
February, 2018
16
January, 2021
14
May, 2023
8
January, 2018
7
August, 2020
7
November, 2020
5
December, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
83
bam
82
fastq
81
bigWig
75
bed narrowPeak
74
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
89
Homo sapiens
Biosample type
61
cell line
25
tissue
3
primary cell
Organ
53
liver
12
blood
12
bodily fluid
12
pancreas
6
spleen
3
connective tissue
3
epithelium
2
brain
1
adipose tissue
Project
89
AMP
Genome assembly (visualization)
81
GRCh38
73
hg19
Lab
84
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
total RNA-seq
files.file_type!
bed bedgraph
target.investigated_as!
control
BIOSAMPLE
ASSAY
89 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
MeRIP-seq
ATAC-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
GM12878
12
EndoC_BH1
3
tissue
liver
4
2
spleen
3
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 3 more…
primary cell
osteoblast
1
1
pancreatic cell
1
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