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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
72
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
72
DNA binding
6
DNA accessibility
6
DNA methylation
3
Transcription
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
17
transcription factor
11
narrow histone mark
5
RNA binding protein
Date released
56
August, 2017
23
October, 2018
3
July, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
November, 2019
1
October, 2017
1
October, 2019
Available data
47
bam
44
fastq
30
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
4
tsv
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
89
Homo sapiens
Biosample type
88
tissue
1
in vitro differentiated cells
1
primary cell
Organ
539
liver
527
pancreas
371
epithelium
291
heart
222
brain
216
kidney
200
connective tissue
158
vasculature
156
blood vessel
97
bone element
90
adipose tissue
81
artery
79
limb
69
blood
69
bodily fluid
44
musculature of body
38
eye
36
nerve
24
spleen
23
embryo
20
lung
18
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
90
AMP
Genome assembly (visualization)
27
hg19
26
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
total RNA-seq
files.file_type!
bed broadPeak
bedpe
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
12
1
1
1
omental fat pad
11
1
1
white adipose tissue
12
adipose tissue
2
3
3
1
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in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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