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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
9
ATAC-seq
total RNA-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
86
DNA binding
9
DNA accessibility
4
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
25
control
17
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
61
October, 2019
8
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
1
March, 2020
1
October, 2017
Available data
134
bam
106
bed narrowPeak
103
bigWig
97
bigBed narrowPeak
37
bed bed3+
bed broadPeak
37
bigBed broadPeak
24
fastq
3
bed bedMethyl
3
bigBed bedMethyl
1
tsv
Organism
103
Homo sapiens
Biosample type
103
tissue
Organ
539
liver
528
pancreas
371
epithelium
heart
222
brain
216
kidney
200
connective tissue
158
vasculature
156
blood vessel
97
bone element
90
adipose tissue
81
artery
79
limb
69
blood
69
bodily fluid
44
musculature of body
38
eye
36
nerve
24
spleen
23
embryo
20
lung
18
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
103
AMP
Genome assembly (visualization)
71
GRCh38
69
hg19
Lab
103
AMP-T2D consortium
assay_title!
total RNA-seq
files.file_type!
bed broadPeak
organ_slims!
heart
BIOSAMPLE
ASSAY
103 results
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ChIP-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
1
spleen
20
1
2
1
tibial artery
23
1
muscle of leg
7
1
gastrocnemius medialis
4
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