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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
66
ChIP-seq
6
WGBS
3
small RNA-seq
2
ATAC-seq
1
RNA microarray
1
pCHi-C
Assay category
66
DNA binding
6
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
12
transcription factor
10
narrow histone mark
Date released
54
August, 2017
18
October, 2018
3
July, 2019
1
August, 2021
1
January, 2018
1
March, 2020
1
October, 2019
Available data
47
bam
44
fastq
30
bigWig
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
4
tsv
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
bedpe bed3+
Organism
78
Homo sapiens
Biosample type
78
tissue
1
primary cell
Organ
328
pancreas
234
epithelium
146
liver
134
connective tissue
127
heart
111
kidney
89
bone element
79
adipose tissue
66
brain
40
vasculature
38
blood vessel
28
musculature of body
23
limb
20
lung
15
blood
15
bodily fluid
11
artery
11
nerve
11
spleen
9
eye
8
vein
5
gonad
5
ovary
4
embryo
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
Lab
79
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
total RNA-seq
files.file_type!
bed narrowPeak
bedpe bed3+
month_released!
December, 2017
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
WGBS
small RNA-seq
ATAC-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
white adipose tissue
12
omental fat pad
8
1
adipose tissue
1
3
2
1
primary cell
mesenchymal stem cell of adipose
1
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