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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
ChIP-seq
total RNA-seq
9
WGBS
6
RRBS
1
DNase-seq
Assay category
164
DNA binding
15
DNA methylation
1
DNA accessibility
Target of assay
91
histone
91
histone modification
53
broad histone mark
50
control
38
narrow histone mark
23
transcription factor
1
RNA binding protein
Date released
180
August, 2017
147
February, 2021
139
August, 2021
136
May, 2022
124
May, 2020
95
October, 2019
93
November, 2017
84
May, 2021
57
July, 2019
49
April, 2018
48
July, 2018
47
February, 2023
47
September, 2023
46
March, 2020
43
September, 2020
29
October, 2018
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
November, 2018
14
May, 2023
10
November, 2020
10
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
January, 2019
4
November, 2019
4
October, 2022
3
June, 2018
1
August, 2022
1
September, 2018
Available data
198
fastq
193
bam
183
bigWig
bed narrowPeak
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
179
Homo sapiens
Biosample type
129
tissue
26
primary cell
25
in vitro differentiated cells
Organ
79
connective tissue
54
adipose tissue
50
pancreas
36
liver
13
musculature of body
12
epithelium
Project
180
AMP
Genome assembly (visualization)
45
hg19
42
GRCh38
Lab
180
AMP-T2D consortium
Audit category:
38
missing controlled_by
assay_title!
total RNA-seq
files.file_type!
bed narrowPeak
lab.title!
Stephen Parker, UMich
month_released!
May, 2019
BIOSAMPLE
ASSAY
180 results
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Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
tissue
subcutaneous abdominal adipose tissue
35
3
liver
31
3
1
islet of Langerhans
24
skeletal muscle tissue
9
4
white adipose tissue
12
+ See 3 more…
primary cell
pancreatic endocrine cell
12
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle myoblast
1
1
in vitro differentiated cells
adipocyte
25
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