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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
11
ChIP-seq
4
pCHi-C
1
ATAC-seq
1
GRO-seq
1
RRBS
Assay category
11
DNA binding
1
DNA accessibility
1
DNA methylation
Target of assay
8
control
3
histone
3
histone modification
3
narrow histone mark
Date released
7
October, 2019
5
December, 2017
3
February, 2018
1
January, 2018
1
July, 2019
1
June, 2019
Available data
bed narrowPeak
29
bam
23
fastq
21
bigWig
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
18
Homo sapiens
Biosample type
9
in vitro differentiated cells
7
tissue
2
primary cell
Organ
335
pancreas
242
epithelium
161
liver
135
connective tissue
130
heart
111
kidney
89
bone element
80
adipose tissue
66
brain
42
vasculature
40
blood vessel
30
musculature of body
23
limb
20
lung
15
blood
15
bodily fluid
artery
11
nerve
11
spleen
9
embryo
9
eye
9
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
18
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
1
hg18
Lab
18
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
total RNA-seq
files.file_type!
bed narrowPeak
organ_slims!
artery
BIOSAMPLE
ASSAY
18 results
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Clear Filters
ChIP-seq
pCHi-C
ATAC-seq
GRO-seq
RRBS
in vitro differentiated cells
pancreatic endoderm
6
1
Hepatic endoderm
2
tissue
islet of Langerhans
2
4
1
primary cell
retinal pigment epithelial cell
1
1
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