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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
73
ChIP-seq
6
ATAC-seq
4
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
73
DNA binding
8
DNA accessibility
4
DNA methylation
3
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
55
August, 2017
23
October, 2018
3
July, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
47
bam
44
fastq
30
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
4
tsv
3
bed broadPeak
2
bed bedMethyl
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
90
Homo sapiens
Biosample type
89
tissue
1
in vitro differentiated cells
1
primary cell
Organ
599
liver
542
pancreas
387
epithelium
313
heart
290
kidney
267
brain
207
connective tissue
173
vasculature
168
blood vessel
114
limb
97
bone element
91
adipose tissue
86
musculature of body
85
artery
69
blood
69
bodily fluid
41
eye
38
nerve
23
embryo
23
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
91
AMP
Genome assembly (visualization)
30
hg19
26
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
total RNA-seq
files.file_type!
bedpe
bigBed bedMethyl
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
1
2
subcutaneous adipose tissue
12
1
1
1
white adipose tissue
12
adipose tissue
2
3
1
1
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in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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