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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
45
DNA binding
9
DNA accessibility
Target of assay
39
transcription factor
8
RNA binding protein
8
chromatin remodeller
3
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
18
January, 2019
November, 2018
8
January, 2021
1
January, 2018
Available data
45
bam
45
fastq
43
bigWig
42
bed narrowPeak
42
bigBed narrowPeak
Organism
54
Homo sapiens
Biosample type
46
cell line
8
primary cell
Organ
549
liver
541
pancreas
393
epithelium
321
heart
267
brain
247
kidney
209
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
92
adipose tissue
90
musculature of body
85
artery
54
blood
54
bodily fluid
42
eye
38
nerve
23
embryo
22
vein
20
lung
18
ureter
16
spleen
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
46
AMP
8
T1D
Genome assembly (visualization)
43
hg19
42
GRCh38
Lab
46
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
total RNA-seq
files.file_type!
bedpe
lab.title!
KPMP
month_released!
November, 2018
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
45
1
primary cell
peripheral blood mononuclear cell
8
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