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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
94
ChIP-seq
34
ATAC-seq
18
snATAC-seq
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
94
DNA binding
52
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
115
May, 2021
18
February, 2023
18
May, 2022
16
January, 2021
Available data
82
bed narrowPeak
72
bigWig
62
bam
44
tagAlign
18
fastq
Organism
167
Homo sapiens
Biosample type
90
primary cell
40
tissue
32
in vitro differentiated cells
5
cell line
Organ
39
pancreas
8
blood
8
bodily fluid
1
bone element
bone marrow
1
connective tissue
1
thymus
Project
94
T1D
73
AMP
Genome assembly (visualization)
90
hg19
44
GRCh38
Lab
2234
AMP-T2D consortium
232
Klaus Kaestner, Upenn
167
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
25
Bing Ren, UCSD
25
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
files.file_type!
bedpe
organ_slims!
bone marrow
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
167 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
44
1
CD8-positive, alpha-beta T cell
23
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 10 more…
tissue
islet of Langerhans
29
6
pancreas
4
thymus
1
in vitro differentiated cells
embryonic stem cell
27
5
cell line
EndoC_BH1
3
2
See all biosamples
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