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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
14
ChIP-seq
12
ATAC-seq
1
GRO-seq
Assay category
14
DNA binding
12
DNA accessibility
Target of assay
12
histone
12
histone modification
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
8
December, 2017
8
February, 2021
6
February, 2018
4
February, 2023
1
January, 2018
Available data
22
bam
15
bed narrowPeak
15
fastq
8
bigWig
4
bed bed3
2
bed bed3+
Organism
27
Homo sapiens
Biosample type
15
in vitro differentiated cells
12
tissue
Organ
542
liver
475
pancreas
344
epithelium
281
heart
279
kidney
177
connective tissue
152
brain
149
vasculature
144
blood vessel
100
limb
97
bone element
81
adipose tissue
79
artery
77
musculature of body
68
blood
68
bodily fluid
39
eye
30
nerve
23
spleen
20
lung
18
ureter
16
vein
15
embryo
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
27
AMP
Genome assembly (visualization)
20
hg19
16
GRCh38
1
hg18
Lab
27
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
2
inconsistent control read length
assay_title!
total RNA-seq
files.file_type!
bedpe
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
ATAC-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
12
1
Hepatic endoderm
2
tissue
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
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