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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
533
ChIP-seq
total RNA-seq
22
ATAC-seq
5
DNase-seq
4
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
533
DNA binding
27
DNA accessibility
4
DNA methylation
4
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
106
control
88
histone modification
87
histone
82
recombinant protein
56
RNA binding protein
53
narrow histone mark
34
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
53
August, 2017
52
November, 2018
51
May, 2020
48
December, 2017
22
August, 2021
20
May, 2022
5
October, 2019
4
July, 2019
3
February, 2021
2
March, 2020
1
December, 2018
1
June, 2019
Available data
501
bam
445
fastq
444
bigWig
422
bed narrowPeak
343
bigBed narrowPeak
82
tagAlign
62
bed broadPeak
62
bigBed broadPeak
8
bed bed3+
5
tsv
3
tar
2
bed bedMethyl
2
bedpe bed3+
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
577
Homo sapiens
Biosample type
386
cell line
190
tissue
1
primary cell
Organ
599
liver
543
pancreas
epithelium
313
heart
290
kidney
267
brain
207
connective tissue
173
vasculature
168
blood vessel
114
limb
97
bone element
91
adipose tissue
86
musculature of body
85
artery
69
blood
69
bodily fluid
41
eye
38
nerve
23
embryo
23
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
577
AMP
Genome assembly (visualization)
444
hg19
352
GRCh38
Lab
535
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
total RNA-seq
files.file_type!
bigBed bedMethyl
month_released!
February, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
577 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
1
2
2
2
1
tissue
liver
145
20
2
3
1
1
1
1
right lobe of liver
10
1
2
1
2
primary cell
hepatic stellate cell
1
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