Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
272
ChIP-seq
11
DNase-seq
7
WGBS
2
ATAC-seq
2
RRBS
1
single cell RNA-seq
Assay category
272
DNA binding
13
DNA accessibility
9
DNA methylation
1
Transcription
Target of assay
133
histone modification
132
histone
104
transcription factor
77
broad histone mark
54
narrow histone mark
35
control
27
RNA binding protein
16
recombinant protein
10
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
266
October, 2019
242
August, 2021
217
August, 2017
214
June, 2019
197
May, 2021
164
February, 2021
151
May, 2020
118
May, 2019
98
February, 2023
94
December, 2017
80
April, 2019
78
November, 2018
76
May, 2022
47
September, 2023
40
March, 2020
40
May, 2024
40
September, 2020
39
July, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2018
19
April, 2020
18
October, 2017
14
May, 2023
11
July, 2018
10
April, 2018
8
January, 2018
8
January, 2021
6
November, 2019
5
December, 2019
5
March, 2023
2
June, 2018
2
November, 2020
1
August, 2018
1
October, 2022
1
September, 2018
Available data
200
fastq
194
bam
186
bigWig
163
bed narrowPeak
95
bigBed narrowPeak
69
tagAlign
36
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
9
bed bedMethyl
bigBed bedMethyl
1
csv
Organism
295
Homo sapiens
Biosample type
149
tissue
68
in vitro differentiated cells
60
cell line
18
primary cell
Organ
124
connective tissue
105
liver
pancreas
56
adipose tissue
29
epithelium
24
musculature of body
15
blood
15
bodily fluid
7
spleen
2
brain
Project
295
AMP
Genome assembly (visualization)
181
hg19
165
GRCh38
Lab
295
AMP-T2D consortium
Audit category:
20
missing controlled_by
Audit category:
13
inconsistent control read length
5
inconsistent control run_type
2
inconsistent assembly
assay_title!
total RNA-seq
files.file_type!
bigBed bedMethyl
organ_slims!
pancreas
BIOSAMPLE
ASSAY
295 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
WGBS
ATAC-seq
RRBS
single cell RNA-seq
tissue
liver
52
2
3
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
2
white adipose tissue
12
spleen
6
1
+ See 5 more…
in vitro differentiated cells
adipocyte
67
1
cell line
HepG2
45
GM12878
15
primary cell
skeletal muscle myoblast
15
2
pancreatic cell
1
See all biosamples
Download