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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
54
ChIP-seq
46
ATAC-seq
2
WGBS
2
single cell RNA-seq
1
pCHi-C
Assay category
54
DNA binding
46
DNA accessibility
2
DNA methylation
2
Transcription
Target of assay
26
histone
26
histone modification
18
broad histone mark
17
control
11
transcription factor
8
narrow histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
35
February, 2023
24
October, 2019
14
February, 2021
8
November, 2018
7
December, 2018
7
January, 2019
5
May, 2019
2
August, 2021
1
July, 2019
1
March, 2020
1
October, 2017
Available data
88
bed narrowPeak
72
bam
47
bigWig
38
bigBed narrowPeak
24
fastq
6
tagAlign
5
bed bed3+
5
bed broadPeak
bigBed broadPeak
3
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
105
Homo sapiens
Biosample type
91
tissue
14
cell line
Organ
539
liver
537
pancreas
371
epithelium
291
heart
231
brain
216
kidney
201
connective tissue
158
vasculature
156
blood vessel
97
bone element
91
adipose tissue
81
artery
79
limb
69
blood
69
bodily fluid
57
musculature of body
38
eye
36
nerve
24
spleen
23
embryo
20
lung
18
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
105
AMP
Genome assembly (visualization)
85
GRCh38
48
hg19
Lab
105
AMP-T2D consortium
assay_title!
total RNA-seq
files.file_type!
bigBed broadPeak
month_released!
March, 2019
BIOSAMPLE
ASSAY
105 results
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ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
pCHi-C
tissue
coronary artery
5
36
spleen
20
1
2
1
tibial artery
23
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
6
8
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