Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
Assay category
98
DNA binding
Target of assay
878
histone modification
877
histone
450
transcription factor
443
narrow histone mark
433
broad histone mark
304
control
98
RNA binding protein
82
recombinant protein
30
chromatin remodeller
4
other context
4
other post-translational modification
2
nucleotide modification
Date released
30
November, 2017
21
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
5
May, 2021
5
May, 2024
4
May, 2019
3
April, 2019
2
December, 2017
2
December, 2018
2
June, 2019
1
August, 2021
Available data
98
bigWig
97
bed narrowPeak
94
bam
86
bigBed narrowPeak
85
fastq
7
bed broadPeak
bigBed broadPeak
2
bed bed3+
1
tar
Organism
98
Homo sapiens
Biosample type
60
cell line
27
tissue
9
in vitro differentiated cells
2
primary cell
Organ
54
liver
11
heart
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
epithelium
5
adipose tissue
3
blood vessel
kidney
3
vasculature
1
artery
1
eye
Project
98
AMP
Genome assembly (visualization)
87
GRCh38
85
hg19
Lab
87
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
assay_title!
total RNA-seq
files.file_type!
bigBed broadPeak
organ_slims!
epithelium
kidney
BIOSAMPLE
ASSAY
98 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
50
GM12878
10
tissue
body of pancreas
5
left cardiac atrium
5
heart left ventricle
3
omental fat pad
3
islet of Langerhans
2
+ See 8 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
See all biosamples
Download