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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
total RNA-seq
1
ATAC-seq
1
GRO-seq
Assay category
33
DNA binding
1
DNA accessibility
Target of assay
18
control
12
histone
12
histone modification
8
narrow histone mark
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
12
October, 2019
9
February, 2018
1
January, 2018
Available data
60
bam
42
bigWig
41
bed narrowPeak
bigBed narrowPeak
23
fastq
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
35
Homo sapiens
Biosample type
23
in vitro differentiated cells
12
tissue
Organ
458
pancreas
317
epithelium
244
liver
227
heart
182
connective tissue
142
brain
97
bone element
97
kidney
92
vasculature
90
blood vessel
83
adipose tissue
60
artery
43
musculature of body
36
eye
31
limb
23
embryo
20
lung
15
blood
15
bodily fluid
12
nerve
12
skeleton
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
16
GRCh38
16
hg19
1
hg18
Lab
35
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
total RNA-seq
files.file_type!
bigBed narrowPeak
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
ATAC-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
tissue
tibial nerve
11
1
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