Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
total RNA-seq
70
ChIP-seq
47
ATAC-seq
8
WGBS
4
pCHi-C
3
Hi-C
2
RRBS
1
small RNA-seq
Assay category
94
Transcription
70
DNA binding
47
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
41
histone
41
histone modification
23
broad histone mark
20
control
18
narrow histone mark
9
transcription factor
5
RNA binding protein
Date released
92
August, 2021
40
May, 2024
36
February, 2023
15
July, 2019
14
February, 2021
11
April, 2019
6
May, 2019
6
October, 2019
5
March, 2020
2
June, 2019
1
May, 2021
Available data
191
bed narrowPeak
155
bigWig
142
bam
96
tsv
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
228
Homo sapiens
Biosample type
210
tissue
14
cell line
4
primary cell
Organ
448
pancreas
311
epithelium
244
liver
227
heart
190
kidney
182
connective tissue
142
brain
97
bone element
92
vasculature
90
blood vessel
83
adipose tissue
60
artery
43
musculature of body
36
eye
31
limb
23
embryo
20
lung
15
blood
15
bodily fluid
12
nerve
12
skeleton
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
227
AMP
1
T1D
Genome assembly (visualization)
103
GRCh38
28
hg19
Lab
187
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
total RNA-seq
files.file_type!
bigBed narrowPeak
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
228 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
left cardiac atrium
18
40
coronary artery
2
36
heart left ventricle
18
7
2
4
1
1
1
heart right ventricle
17
2
2
1
1
right cardiac atrium
18
1
1
1
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
2
1
megakaryocyte
1
See all biosamples
Download