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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
43
ATAC-seq
20
ChIP-seq
3
Hi-C
3
pCHi-C
total RNA-seq
2
RRBS
2
WGBS
Assay category
93
Transcription
43
DNA accessibility
20
DNA binding
4
DNA methylation
3
3D chromatin structure
Target of assay
20
control
Date released
92
August, 2021
36
February, 2023
10
April, 2019
10
February, 2021
6
May, 2019
5
March, 2020
4
July, 2019
2
June, 2019
1
October, 2019
Available data
191
bed narrowPeak
bigWig
142
bam
96
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
166
Homo sapiens
Biosample type
153
tissue
10
cell line
3
primary cell
Organ
195
pancreas
174
kidney
166
heart
147
epithelium
97
bone element
80
connective tissue
78
vasculature
77
blood vessel
67
liver
54
artery
49
brain
42
adipose tissue
36
eye
28
limb
24
musculature of body
20
lung
12
skeleton
11
nerve
8
blood
8
bodily fluid
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
urinary bladder
Project
166
AMP
Genome assembly (visualization)
43
GRCh38
13
hg19
Lab
166
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
total RNA-seq
files.file_type!
bigWig
fastq
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
166 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
coronary artery
35
2
heart left ventricle
18
6
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
cardiac fibroblast
2
1
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