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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
total RNA-seq
4
WGBS
3
Hi-C
2
ATAC-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
97
DNA binding
6
DNA methylation
3
3D chromatin structure
3
DNA accessibility
1
DNA sequencing
1
Transcription
Target of assay
72
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
36
August, 2017
May, 2020
13
December, 2017
9
August, 2021
3
February, 2021
2
July, 2019
2
March, 2020
1
December, 2018
1
November, 2018
1
October, 2019
Available data
472
bam
460
fastq
bigWig
414
bed narrowPeak
358
bigBed narrowPeak
63
bed broadPeak
63
bigBed broadPeak
36
tagAlign
13
bed bed3+
4
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
115
Homo sapiens
Biosample type
59
cell line
52
tissue
3
primary cell
1
in vitro differentiated cells
Organ
250
pancreas
174
kidney
168
epithelium
166
heart
115
liver
107
connective tissue
97
bone element
78
vasculature
77
blood vessel
63
adipose tissue
54
artery
52
brain
36
eye
28
limb
26
musculature of body
20
lung
14
blood
14
bodily fluid
12
skeleton
11
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
115
AMP
Genome assembly (visualization)
8
hg19
3
GRCh38
Lab
107
AMP-T2D consortium
8
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
assay_title!
total RNA-seq
files.file_type!
bigWig
month_released!
May, 2020
BIOSAMPLE
ASSAY
115 results
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Clear Filters
ChIP-seq
WGBS
Hi-C
ATAC-seq
RRBS
STARR-seq
pCHi-C
DNase-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
52
2
1
2
1
1
tissue
liver
40
3
1
1
1
1
right lobe of liver
3
1
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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