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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
45
ATAC-seq
38
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
47
DNA accessibility
38
DNA binding
2
Transcription
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
9
control
5
transcription factor
1
RNA binding protein
Date released
35
February, 2023
30
October, 2019
14
February, 2021
5
May, 2019
2
August, 2021
June, 2019
1
July, 2019
1
March, 2020
Available data
72
bed narrowPeak
46
bam
29
bigWig
23
bigBed narrowPeak
6
tagAlign
3
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
88
Homo sapiens
Biosample type
74
tissue
14
cell line
Organ
599
liver
545
pancreas
373
epithelium
286
heart
239
brain
208
kidney
192
connective tissue
168
vasculature
164
blood vessel
97
bone element
92
adipose tissue
83
artery
83
limb
69
blood
69
bodily fluid
47
musculature of body
38
nerve
35
eye
25
spleen
23
embryo
22
vein
20
lung
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
72
GRCh38
37
hg19
Lab
88
AMP-T2D consortium
assay_title!
total RNA-seq
files.file_type!
csv
month_released!
June, 2019
BIOSAMPLE
ASSAY
88 results
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ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
36
5
tibial artery
1
23
2
islet of Langerhans
4
pulmonary artery
2
ovary
1
cell line
smooth muscle cell of the coronary artery
8
6
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