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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
total RNA-seq
46
ATAC-seq
6
DNase-seq
6
single cell RNA-seq
2
Hi-C
2
WGBS
1
pCHi-C
Assay category
79
DNA binding
52
DNA accessibility
6
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
50
May, 2019
35
February, 2023
26
October, 2019
14
February, 2021
6
August, 2021
5
July, 2019
4
June, 2019
2
March, 2020
Available data
113
bed narrowPeak
98
bam
72
bigWig
63
bigBed narrowPeak
7
bed bed3+
7
tsv
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
Organism
142
Homo sapiens
Biosample type
126
tissue
14
cell line
2
primary cell
Organ
601
liver
549
pancreas
393
epithelium
321
heart
289
kidney
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
142
AMP
Genome assembly (visualization)
114
GRCh38
79
hg19
Lab
142
AMP-T2D consortium
assay_title!
total RNA-seq
files.file_type!
csv
organ_slims!
brain
vein
BIOSAMPLE
ASSAY
142 results
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ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
tissue
coronary artery
5
36
2
tibial artery
23
1
2
aorta
13
4
1
2
1
ascending aorta
16
1
thoracic aorta
16
1
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cell line
smooth muscle cell of the coronary artery
6
8
primary cell
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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