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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
32
DNase-seq
total RNA-seq
12
single cell RNA-seq
10
snATAC-seq
4
ATAC-seq
4
small RNA-seq
3
pCHi-C
2
RRBS
1
FAIRE-seq
Assay category
100
DNA binding
47
DNA accessibility
16
Transcription
2
DNA methylation
Target of assay
88
histone
88
histone modification
63
narrow histone mark
25
broad histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
47
October, 2019
30
June, 2019
28
May, 2019
25
November, 2017
19
April, 2020
11
July, 2019
3
March, 2020
2
November, 2018
2
October, 2017
1
February, 2023
Available data
238
bam
217
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
10
tsv
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
167
Homo sapiens
Biosample type
150
tissue
18
primary cell
Organ
529
pancreas
515
liver
384
epithelium
315
heart
294
kidney
187
connective tissue
167
vasculature
161
blood vessel
148
brain
115
limb
97
bone element
85
adipose tissue
79
artery
75
musculature of body
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
149
AMP
19
LungMap
Genome assembly (visualization)
130
GRCh38
113
hg19
Lab
149
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
total RNA-seq
files.file_type!
hdf5
tagAlign
BIOSAMPLE
ASSAY
168 results
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ChIP-seq
DNase-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
small RNA-seq
pCHi-C
RRBS
FAIRE-seq
tissue
brain
6
14
1
1
lung
9
10
1
temporal lobe
15
1
angular gyrus
13
layer of hippocampus
8
+ See 53 more…
primary cell
choroid plexus epithelial cell
3
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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