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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
36
DNA accessibility
7
Transcription
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
11
July, 2019
2
March, 2020
2
November, 2018
February, 2023
Available data
238
bam
217
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
9
tsv
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
265
Homo sapiens
Biosample type
247
tissue
18
primary cell
Organ
601
liver
534
pancreas
378
epithelium
294
kidney
285
heart
265
brain
199
connective tissue
138
vasculature
132
blood vessel
115
limb
93
bone element
92
adipose tissue
90
musculature of body
69
blood
69
bodily fluid
50
artery
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
15
eye
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
small intestine
1
stomach
1
urinary bladder
Project
265
AMP
Genome assembly (visualization)
212
GRCh38
155
hg19
Lab
265
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
total RNA-seq
files.file_type!
hdf5
month_released!
February, 2023
organ_slims!
small intestine
BIOSAMPLE
ASSAY
265 results
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ChIP-seq
DNase-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
temporal lobe
15
1
+ See 74 more…
primary cell
choroid plexus epithelial cell
3
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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