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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
18
small RNA-seq
16
snATAC-seq
15
RRBS
12
WGBS
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
27
DNA methylation
24
DNA accessibility
21
Transcription
4
3D chromatin structure
Target of assay
3
control
Date released
406
November, 2017
322
August, 2017
283
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
60
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
41
bigWig
38
bam
23
bed bedMethyl
23
bigBed bedMethyl
21
tsv
7
bed narrowPeak
4
bed bed3+
hdf5
2
bigBed narrowPeak
Organism
76
Homo sapiens
Biosample type
54
tissue
22
primary cell
Organ
15
heart
12
pancreas
11
brain
8
blood
8
bodily fluid
8
musculature of body
6
epithelium
6
kidney
5
limb
5
liver
5
vasculature
4
blood vessel
4
connective tissue
3
adipose tissue
1
artery
1
eye
1
pericardium
Project
60
AMP
16
T1D
Genome assembly (visualization)
43
hg19
35
GRCh38
Lab
60
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
total RNA-seq
files.file_type!
hdf5
month_released!
May, 2023
BIOSAMPLE
ASSAY
76 results
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Clear Filters
small RNA-seq
snATAC-seq
RRBS
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
1
4
2
islet of Langerhans
4
1
pancreas
4
1
gastrocnemius medialis
4
right lobe of liver
2
1
+ See 24 more…
primary cell
peripheral blood mononuclear cell
8
cerebellar granule cell
2
Purkinje cell
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 9 more…
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