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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
70
ChIP-seq
48
WGBS
35
single cell RNA-seq
total RNA-seq
22
snATAC-seq
9
DNase-seq
1
FAIRE-seq
Assay category
109
DNA accessibility
70
DNA binding
48
DNA methylation
35
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
283
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
60
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
111
bed narrowPeak
106
fastq
105
bam
100
bigWig
73
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
1
txt
Organism
262
Homo sapiens
Biosample type
135
primary cell
66
tissue
61
cell line
Organ
105
pancreas
80
epithelium
73
liver
15
blood
15
bodily fluid
9
spleen
2
brain
2
musculature of body
1
adipose tissue
1
connective tissue
Project
134
HPAP
128
AMP
Genome assembly (visualization)
110
hg19
79
GRCh38
Lab
134
Klaus Kaestner, Upenn
90
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
total RNA-seq
files.file_type!
hdf5
month_released!
November, 2019
BIOSAMPLE
ASSAY
262 results
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Clear Filters
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
pancreatic cell
1
tissue
liver
20
4
2
islet of Langerhans
18
spleen
6
2
1
body of pancreas
2
2
pancreas
2
1
+ See 4 more…
cell line
HepG2
45
1
GM12878
15
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