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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
total RNA-seq
5
RRBS
4
Hi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
6
DNA methylation
4
3D chromatin structure
3
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
8
July, 2019
7
May, 2019
2
May, 2022
1
January, 2018
1
March, 2020
Available data
64
bigWig
60
bed narrowPeak
53
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
hic
1
txt
Organism
88
Homo sapiens
Biosample type
75
tissue
13
primary cell
Organ
599
liver
534
pancreas
387
epithelium
318
heart
293
kidney
269
brain
210
connective tissue
172
vasculature
166
blood vessel
115
limb
97
bone element
93
adipose tissue
88
musculature of body
85
artery
61
blood
61
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
20
lung
20
vein
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
67
hg19
49
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
files.file_type!
hic
vcf
month_released!
January, 2021
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
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