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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
total RNA-seq
19
WGBS
18
small RNA-seq
15
RRBS
9
DNase-seq
8
Hi-C
6
ATAC-seq
4
single cell RNA-seq
3
FAIRE-seq
Assay category
70
DNA binding
34
DNA methylation
22
Transcription
18
DNA accessibility
8
3D chromatin structure
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
October, 2018
64
July, 2019
49
April, 2018
48
July, 2018
47
March, 2020
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
125
bam
121
bigWig
88
fastq
80
bed narrowPeak
75
bigBed narrowPeak
30
bed bedMethyl
30
bigBed bedMethyl
21
tsv
13
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
4
hdf5
1
csv
Organism
152
Homo sapiens
Biosample type
72
tissue
61
cell line
19
primary cell
Organ
59
liver
16
brain
15
blood
15
bodily fluid
15
heart
11
pancreas
9
spleen
8
epithelium
8
musculature of body
7
vasculature
6
blood vessel
6
connective tissue
6
kidney
5
limb
4
adipose tissue
1
artery
1
eye
1
pericardium
Project
152
AMP
Genome assembly (visualization)
118
hg19
114
GRCh38
Lab
152
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
total RNA-seq
files.file_type!
ibed
month_released!
October, 2018
BIOSAMPLE
ASSAY
152 results
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Clear Filters
ChIP-seq
WGBS
small RNA-seq
RRBS
DNase-seq
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
spleen
6
2
1
heart left ventricle
4
1
2
liver
4
1
2
body of pancreas
2
2
2
gastrocnemius medialis
4
+ See 25 more…
cell line
HepG2
45
1
GM12878
15
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 13 more…
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