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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
24
ChIP-seq
4
RRBS
total RNA-seq
2
Hi-C
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
24
DNA binding
4
DNA methylation
2
3D chromatin structure
1
Transcription
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
4
control
Date released
43
June, 2019
11
August, 2017
July, 2019
7
May, 2019
3
March, 2020
2
May, 2022
1
January, 2018
Available data
61
bigWig
60
bed narrowPeak
50
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
tagAlign
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
tsv
1
txt
Organism
67
Homo sapiens
Biosample type
56
tissue
11
primary cell
Organ
526
pancreas
510
liver
378
epithelium
300
heart
288
kidney
183
connective tissue
162
vasculature
157
blood vessel
137
brain
110
limb
97
bone element
82
adipose tissue
78
artery
69
blood
69
bodily fluid
67
musculature of body
41
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
67
AMP
Genome assembly (visualization)
53
hg19
46
GRCh38
Lab
67
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
files.file_type!
tagAlign
month_released!
July, 2019
organ_slims!
gonad
BIOSAMPLE
ASSAY
67 results
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DNase-seq
ChIP-seq
RRBS
Hi-C
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
13
7
muscle of arm
17
skeletal muscle tissue
7
4
1
1
1
psoas muscle
2
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
1
2
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