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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
340
ChIP-seq
Assay category
340
DNA binding
Target of assay
244
transcription factor
88
histone
88
histone modification
71
control
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
340
November, 2017
322
August, 2017
276
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
80
April, 2019
74
October, 2018
72
November, 2018
64
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
326
bam
268
bigWig
258
fastq
247
bed narrowPeak
246
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
340
Homo sapiens
Biosample type
249
cell line
82
tissue
9
primary cell
Organ
249
liver
91
brain
6
epithelium
6
vasculature
3
blood vessel
Project
340
AMP
Genome assembly (visualization)
216
hg19
214
GRCh38
Lab
340
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
20
inconsistent control read length
4
inconsistent control run_type
assay_title!
total RNA-seq
files.file_type!
tagAlign bed3+
files.file_type!!
tagAlign bed3+
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
340 results
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ChIP-seq
cell line
HepG2
249
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 1 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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