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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ATAC-seq
41
WGBS
34
single cell RNA-seq
total RNA-seq
22
snATAC-seq
15
ChIP-seq
Assay category
107
DNA accessibility
41
DNA methylation
34
Transcription
15
DNA binding
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
406
November, 2017
322
August, 2017
283
October, 2019
218
June, 2019
217
May, 2021
181
August, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
50
bed narrowPeak
35
fastq
34
bigWig
33
bam
14
tagAlign
6
bigBed narrowPeak
4
bed broadPeak
1
bed bed3+
1
txt
Organism
197
Homo sapiens
Biosample type
134
primary cell
63
tissue
Organ
103
pancreas
80
epithelium
20
liver
16
brain
2
musculature of body
1
adipose tissue
1
connective tissue
1
spleen
Project
134
HPAP
63
AMP
Genome assembly (visualization)
52
hg19
14
GRCh38
Lab
134
Klaus Kaestner, Upenn
24
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
4
missing controlled_by
assay_title!
total RNA-seq
files.file_type!
tagAlign bed3+
xls
BIOSAMPLE
ASSAY
197 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
ChIP-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
islet of Langerhans
19
brain
15
body of pancreas
4
skeletal muscle tissue
1
1
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