Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
85
single cell RNA-seq
50
ATAC-seq
48
snATAC-seq
41
WGBS
3
Hi-C
Assay category
98
DNA accessibility
85
Transcription
41
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
43
September, 2020
39
February, 2021
7
August, 2020
3
October, 2022
1
October, 2017
Available data
153
zippedFastqFolder
78
fastq
11
bigWig
tsv
3
bedpe bed3+
3
cool
3
hic
1
bed broadPeak
Organism
227
Homo sapiens
Biosample type
226
primary cell
1
tissue
Organ
94
pancreas
93
epithelium
Project
226
HPAP
1
AMP
Genome assembly (visualization)
11
GRCh38
4
hg19
Lab
1548
AMP-T2D consortium
226
Klaus Kaestner, Upenn
94
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
25
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
assay_title!
total RNA-seq
files.file_type!
tsv
target.investigated_as!
histone
BIOSAMPLE
ASSAY
227 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
25
1
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
1
Download