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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
68
ChIP-seq
total RNA-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
82
DNA accessibility
68
DNA binding
8
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
27
histone
27
histone modification
25
transcription factor
16
control
14
narrow histone mark
13
broad histone mark
7
RNA binding protein
6
chromatin remodeller
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
174
May, 2022
156
February, 2021
150
May, 2020
147
August, 2021
120
May, 2019
100
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
47
September, 2018
47
September, 2023
43
July, 2019
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
17
March, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
127
bed narrowPeak
tsv
64
xls
59
bam
53
bigWig
25
fastq
24
tagAlign
21
bigBed narrowPeak
8
txt
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
171
Homo sapiens
Biosample type
88
tissue
45
cell line
35
in vitro differentiated cells
4
primary cell
Organ
81
kidney
26
liver
18
blood
18
bodily fluid
7
spleen
6
epithelium
5
connective tissue
3
pancreas
1
adipose tissue
Project
172
AMP
Genome assembly (visualization)
111
GRCh38
66
hg19
Lab
79
Katalin Susztak, Upenn
63
AMP-T2D consortium
26
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
total RNA-seq
files.file_type!
tsv
BIOSAMPLE
ASSAY
172 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
8
6
1
spleen
7
islet of Langerhans
1
subcutaneous adipose tissue
1
cell line
HepG2
18
2
1
1
GM12878
18
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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