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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
14
ATAC-seq
4
Hi-C
total RNA-seq
1
WGBS
Assay category
66
DNA binding
50
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
32
June, 2019
8
February, 2021
7
May, 2019
5
July, 2019
4
February, 2023
Available data
112
bam
94
bed narrowPeak
87
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
121
Homo sapiens
Biosample type
121
tissue
Organ
597
liver
458
pancreas
315
epithelium
281
kidney
260
brain
225
heart
201
connective tissue
168
vasculature
162
blood vessel
115
limb
97
bone element
89
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
24
spleen
23
embryo
22
vein
lung
18
ureter
12
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
121
AMP
Genome assembly (visualization)
98
hg19
94
GRCh38
Lab
121
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
files.file_type!
tsv
organ_slims!
lung
BIOSAMPLE
ASSAY
121 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
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