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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
46
ATAC-seq
34
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
50
DNA accessibility
34
DNA binding
2
Transcription
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
35
February, 2023
27
October, 2019
14
February, 2021
5
May, 2019
2
August, 2021
2
June, 2019
1
July, 2019
Available data
74
bed narrowPeak
48
bam
31
bigWig
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tsv
Organism
86
Homo sapiens
Biosample type
72
tissue
14
cell line
Organ
601
liver
549
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
86
AMP
Genome assembly (visualization)
74
GRCh38
39
hg19
Lab
86
AMP-T2D consortium
assay_title!
total RNA-seq
files.file_type!
vcf
BIOSAMPLE
ASSAY
86 results
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ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
36
5
2
tibial artery
1
23
2
pulmonary artery
2
islet of Langerhans
1
cell line
smooth muscle cell of the coronary artery
8
6
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