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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
DNase-seq
64
single cell RNA-seq
total RNA-seq
37
ChIP-seq
11
ATAC-seq
6
snATAC-seq
3
snDrop-seq
2
STARR-seq
2
pCHi-C
1
Hi-C
1
RNA microarray
Assay category
85
DNA accessibility
64
Transcription
37
DNA binding
1
3D chromatin structure
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
68
June, 2019
47
September, 2023
23
April, 2019
17
August, 2021
14
May, 2023
14
October, 2019
8
February, 2021
July, 2019
2
December, 2019
2
March, 2020
Available data
159
bed narrowPeak
105
bam
95
bigWig
86
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
xls
13
txt
11
tsv
5
csv
1
hic
Organism
195
Homo sapiens
Biosample type
181
tissue
14
cell line
Organ
596
liver
545
pancreas
epithelium
306
heart
255
brain
224
kidney
205
connective tissue
168
vasculature
163
blood vessel
110
limb
97
bone element
90
adipose tissue
84
artery
82
musculature of body
69
blood
69
bodily fluid
41
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
148
AMP
47
KPMP
Genome assembly (visualization)
106
GRCh38
95
hg19
Lab
117
AMP-T2D consortium
47
KPMP
29
Katalin Susztak, Upenn
2
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
6
audit script error
assay_title!
total RNA-seq
files.file_type!
xls
month_released!
July, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
195 results
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DNase-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
snDrop-seq
STARR-seq
pCHi-C
Hi-C
RNA microarray
tissue
kidney
13
64
27
11
6
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 8 more…
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 vector
3
1
RCC 7860 HIF2a over-expression
3
HEK293T
2
RCC 7860 VHL
1
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