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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
30
DNase-seq
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
35
DNA accessibility
7
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
14
July, 2019
2
March, 2020
November, 2018
1
February, 2023
Available data
236
bam
215
bigWig
201
bed narrowPeak
125
bigBed narrowPeak
118
tagAlign
45
bed broadPeak
36
bigBed broadPeak
33
bed bed3+
19
fastq
9
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
267
Homo sapiens
Biosample type
246
tissue
21
primary cell
Organ
549
liver
462
pancreas
321
heart
313
epithelium
kidney
267
brain
209
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
92
adipose tissue
90
musculature of body
85
artery
54
blood
54
bodily fluid
42
eye
38
nerve
23
embryo
22
vein
20
lung
18
ureter
16
spleen
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
267
AMP
Genome assembly (visualization)
210
GRCh38
157
hg19
Lab
267
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
total RNA-seq
files.file_type!
zippedFastqFolder
month_released!
November, 2018
organ_slims!
kidney
BIOSAMPLE
ASSAY
267 results
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ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
12
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
temporal lobe
15
1
+ See 74 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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